PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1486_p3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 303aa    MW: 33635.4 Da    PI: 8.3176
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1486_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.51e-12132178455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  h  +Er+RR+++N+++  L  llP +     kK +Ka++Le A++++k+Lq
  RrC1486_p3 132 EHVLAERKRRQKLNERLIALSALLPGL-----KKADKASVLEDAIKHLKQLQ 178
                 5889***********************.....9******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.707128177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.29E-16128191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-15132191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-10132178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.26E-12133182No hitNo description
SMARTSM003534.2E-14134183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MEDSSFTDLM LDTDEYLIDD WESDFPLVPG ETTDHQNPVL GSGSESRFIL IPERPTKQLK  60
VNSTSSSSSS SSSSGSLTTP QVISFGAQVP MMNVAETSFN FSNQANMDQN AGSKRKECGI  120
NGGKREPHLL KEHVLAERKR RQKLNERLIA LSALLPGLKK ADKASVLEDA IKHLKQLQER  180
VKKLEEERVG TKKMDQSVIL VKRSQVYVED GSSSYSSICS AASPPSSSLD EVSILKQTMP  240
MIEARVSDRD LLIRIHCEKN RGCLVKILSS LEKFRLEVVN SFTLPFGNKS LVITILSKKI  300
SYI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1136141ERKRRQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013708385.11e-180PREDICTED: transcription factor NAI1-like isoform X1
RefseqXP_013708386.11e-180PREDICTED: transcription factor NAI1-like isoform X1
SwissprotQ8S3F11e-141BH020_ARATH; Transcription factor NAI1
TrEMBLM4FFQ31e-176M4FFQ3_BRARP; Uncharacterized protein
STRINGBra039927.1-P1e-176(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM136071726
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22770.11e-139bHLH family protein